Index

_

__init__() (spiketools.objects.Session method) (spiketools.objects.Unit method)

A

action potential / spike add_box_shade() (in module spiketools.plts.annotate) add_box_shades() (in module spiketools.plts.annotate) add_dots() (in module spiketools.plts.annotate) add_gridlines() (in module spiketools.plts.annotate) add_hlines() (in module spiketools.plts.annotate) add_hshades() (in module spiketools.plts.annotate) add_key_prefix() (in module spiketools.utils.base) add_significance() (in module spiketools.plts.annotate)

add_text_labels() (in module spiketools.plts.annotate) add_unit() (spiketools.objects.Session method) add_vlines() (in module spiketools.plts.annotate) add_vshades() (in module spiketools.plts.annotate) ANOVA AP apply_refractory_times() (in module spiketools.sim.utils) apply_refractory_train() (in module spiketools.sim.utils) assign_data_to_bins() (in module spiketools.utils.data)

B

bin_circular() (in module spiketools.measures.circular)

C

check_array_lst_orientation() (in module spiketools.utils.checks) check_array_orientation() (in module spiketools.utils.checks) check_ax() (in module spiketools.plts.utils) check_axis() (in module spiketools.utils.checks) check_bin_definition() (in module spiketools.spatial.checks) check_bin_range() (in module spiketools.utils.checks) check_bin_widths() (in module spiketools.spatial.checks) check_keys() (in module spiketools.utils.base) check_list_options() (in module spiketools.utils.checks) check_param_lengths() (in module spiketools.utils.checks) check_param_options() (in module spiketools.utils.checks) check_param_range() (in module spiketools.utils.checks) check_param_type() (in module spiketools.utils.checks) check_position() (in module spiketools.spatial.checks) check_time_bins() (in module spiketools.utils.checks) coefficient of variation color_pvalue() (in module spiketools.plts.annotate) combine_dicts() (in module spiketools.utils.base) compare_pre_post_activity() (in module spiketools.stats.trials) compare_trial_frs() (in module spiketools.stats.trials) compute_bin_assignment() (in module spiketools.spatial.occupancy) compute_bin_counts_assgn() (in module spiketools.spatial.occupancy) compute_bin_counts_pos() (in module spiketools.spatial.occupancy) compute_bin_edges() (in module spiketools.spatial.occupancy) compute_bin_width() (in module spiketools.spatial.utils) compute_cumulative_distances() (in module spiketools.spatial.distance) compute_cv() (in module spiketools.measures.spikes) compute_distance() (in module spiketools.spatial.distance) compute_distances() (in module spiketools.spatial.distance) compute_distances_to_location() (in module spiketools.spatial.distance) compute_fano_factor() (in module spiketools.measures.spikes) compute_firing_rate() (in module spiketools.measures.spikes) compute_isis() (in module spiketools.measures.spikes) compute_nbins() (in module spiketools.spatial.utils) compute_occupancy() (in module spiketools.spatial.occupancy) compute_occupancy_df() (in module spiketools.spatial.occupancy) compute_place_bins() (in module spiketools.spatial.place) compute_pos_ranges() (in module spiketools.spatial.utils) compute_pre_post_averages() (in module spiketools.measures.trials) compute_pre_post_diffs() (in module spiketools.measures.trials)

compute_pre_post_rates() (in module spiketools.measures.trials) compute_pre_post_ttest() (in module spiketools.stats.trials) compute_presence_ratio() (in module spiketools.measures.spikes) compute_range() (in module spiketools.utils.data) compute_sample_durations() (in module spiketools.utils.timestamps) compute_segment_frs() (in module spiketools.measures.trials) compute_spatial_information() (in module spiketools.spatial.information) compute_speed() (in module spiketools.spatial.speed) compute_spike_presence() (in module spiketools.measures.spikes) compute_surrogate_pvalue() (in module spiketools.stats.permutations) compute_surrogate_stats() (in module spiketools.stats.permutations) compute_surrogate_zscore() (in module spiketools.stats.permutations) compute_target_bins() (in module spiketools.spatial.target) compute_trial_frs() (in module spiketools.measures.trials) compute_trial_occupancy() (in module spiketools.spatial.occupancy) compute_trial_place_bins() (in module spiketools.spatial.place) convert_1dindices() (in module spiketools.spatial.utils) convert_2dindices() (in module spiketools.spatial.utils) convert_isis_to_times() (in module spiketools.measures.conversions) convert_min_to_hour() (in module spiketools.utils.timestamps) convert_ms_to_min() (in module spiketools.utils.timestamps) convert_ms_to_sec() (in module spiketools.utils.timestamps) convert_nsamples_to_time() (in module spiketools.utils.timestamps) convert_sec_to_min() (in module spiketools.utils.timestamps) convert_time_to_nsamples() (in module spiketools.utils.timestamps) convert_times_to_counts() (in module spiketools.measures.conversions) convert_times_to_rates() (in module spiketools.measures.conversions) convert_times_to_train() (in module spiketools.measures.conversions) convert_train_to_times() (in module spiketools.measures.conversions) count_elements() (in module spiketools.utils.base) create_bin_times() (in module spiketools.utils.timestamps) create_dataframe() (in module spiketools.stats.anova) create_dataframe_bins() (in module spiketools.stats.anova) create_heatmap_title() (in module spiketools.plts.spatial) create_mask() (in module spiketools.utils.extract) create_methods_list() (in module spiketools.utils.run) create_nan_mask() (in module spiketools.utils.extract) create_position_df() (in module spiketools.spatial.occupancy) create_raster_title() (in module spiketools.plts.trials) cv() (spiketools.objects.Unit method)

D

detect_empty_time_ranges() (in module spiketools.measures.collections) drop_key_prefix() (in module spiketools.utils.base)

drop_nans() (in module spiketools.utils.data) drop_range() (in module spiketools.utils.extract) drop_spines() (in module spiketools.plts.style)

E

electrode epoch_data_by_event() (in module spiketools.utils.epoch) epoch_data_by_range() (in module spiketools.utils.epoch) epoch_data_by_segment() (in module spiketools.utils.epoch)

epoch_data_by_time() (in module spiketools.utils.epoch) epoch_spikes_by_event() (in module spiketools.utils.epoch) epoch_spikes_by_range() (in module spiketools.utils.epoch) epoch_spikes_by_segment() (in module spiketools.utils.epoch) extracellular recording

F

fano factor fano() (spiketools.objects.Unit method) find_empty_bins() (in module spiketools.measures.collections) find_empty_ranges() (in module spiketools.measures.collections)

firing rate firing_rate() (spiketools.objects.Unit method) fit_anova() (in module spiketools.stats.anova) flatten() (in module spiketools.utils.base) format_time_string() (in module spiketools.utils.timestamps)

G

get_closest_position() (in module spiketools.spatial.distance) get_grid_subplot() (in module spiketools.plts.utils) get_ind_by_time() (in module spiketools.utils.extract) get_ind_by_value() (in module spiketools.utils.extract) get_inds_by_times() (in module spiketools.utils.extract) get_inds_by_values() (in module spiketools.utils.extract)

get_position_xy() (in module spiketools.spatial.utils) get_range() (in module spiketools.utils.extract) get_value_by_time() (in module spiketools.utils.extract) get_value_range() (in module spiketools.utils.extract) get_values_by_time_range() (in module spiketools.utils.extract) get_values_by_times() (in module spiketools.utils.extract)

H

Hertz (Hz)

I

infer_time_unit() (in module spiketools.utils.timestamps) interspike interval (ISI) intracellular recording

invert_axes() (in module spiketools.plts.style) ISIs isis() (spiketools.objects.Unit method)

L

LFP	listify() (in module spiketools.utils.base) lower_list() (in module spiketools.utils.base)

M

make_axes() (in module spiketools.plts.utils) make_grid() (in module spiketools.plts.utils) make_orientation() (in module spiketools.utils.data)

micro-electrode MUA multi-unit

N

n_units (spiketools.objects.Session property) neurodata without borders

normalize_bin_counts() (in module spiketools.spatial.occupancy) NWB

P

permute_vector() (in module spiketools.utils.data) plot_bar() (in module spiketools.plts.data) plot_barh() (in module spiketools.plts.data) plot_firing_rates() (in module spiketools.plts.spikes) plot_heatmap() (in module spiketools.plts.spatial) plot_hist() (in module spiketools.plts.data) plot_isis() (in module spiketools.plts.spikes) plot_lines() (in module spiketools.plts.data) plot_points() (in module spiketools.plts.data) plot_polar_hist() (in module spiketools.plts.data) plot_position_1d() (in module spiketools.plts.spatial) plot_position_by_time() (in module spiketools.plts.spatial)

plot_positions() (in module spiketools.plts.spatial) plot_rasters() (in module spiketools.plts.trials) plot_rate_by_time() (in module spiketools.plts.trials) plot_scatter() (in module spiketools.plts.data) plot_surrogates() (in module spiketools.plts.stats) plot_task_events() (in module spiketools.plts.task) plot_task_structure() (in module spiketools.plts.task) plot_text() (in module spiketools.plts.data) plot_trial_heatmaps() (in module spiketools.plts.spatial) plot_waveform() (in module spiketools.plts.spikes) plot_waveform_density() (in module spiketools.plts.spikes) plot_waveforms3d() (in module spiketools.plts.spikes) poisson_generator() (in module spiketools.stats.generators)

R

raster / raster plot recombine_trial_data() (in module spiketools.utils.trials)

refractory period reinstate_range() (in module spiketools.utils.extract) relabel_keys() (in module spiketools.utils.base)

S

sampling rate save_figure() (in module spiketools.plts.utils) select_from_arrays() (in module spiketools.utils.extract) select_from_list() (in module spiketools.utils.base) Session (class in spiketools.objects) set_random_seed() (in module spiketools.utils.random) set_random_state() (in module spiketools.utils.random) shuffle() (spiketools.objects.Unit method) shuffle_bins() (in module spiketools.stats.shuffle) shuffle_circular() (in module spiketools.stats.shuffle) shuffle_isis() (in module spiketools.stats.shuffle) shuffle_poisson() (in module spiketools.stats.shuffle) shuffle_spikes() (in module spiketools.stats.shuffle) sim_spiketimes() (in module spiketools.sim) sim_spiketimes_poisson() (in module spiketools.sim.times) sim_spiketrain() (in module spiketools.sim)

sim_spiketrain_binom() (in module spiketools.sim.train) sim_spiketrain_poisson() (in module spiketools.sim.train) sim_spiketrain_prob() (in module spiketools.sim.train) sim_trials() (in module spiketools.sim) sim_trials_poisson() (in module spiketools.sim.trials) smooth_data() (in module spiketools.utils.data) spike sorting spike times spike train spike_train() (spiketools.objects.Unit method) split_time_value() (in module spiketools.utils.timestamps) split_trials_by_condition() (in module spiketools.utils.trials) split_trials_by_condition_array() (in module spiketools.utils.trials) split_trials_by_condition_list() (in module spiketools.utils.trials) SUA subset_dict() (in module spiketools.utils.base) sum_time_ranges() (in module spiketools.utils.timestamps)

T

tetrode

threshold_spikes_by_times() (in module spiketools.utils.extract) threshold_spikes_by_values() (in module spiketools.utils.extract)

U

Unit (class in spiketools.objects)

unit / single unit

W

waveform / spike waveform